About SpatiaBio
Practical spatial transcriptomics tutorials for researchers who want to actually use the tools.
What This Blog Is
SpatiaBio is a tutorial-focused blog covering spatial transcriptomics analysis - from raw Visium data to publication-ready figures. Every post is built around working code, real datasets, and the kind of practical decisions that don't appear in papers.
Topics include Squidpy, cell2location, Tangram, SpatialDE2, Xenium vs Visium comparisons, spatial multi-omics integration, and more. Posts are written for researchers who are already comfortable with Python and scRNA-seq but are new to the spatial layer.
Who Writes It
SpatiaBio is written by a computational biology researcher focused on spatial omics and tumor microenvironment analysis. The goal is to bridge the gap between cutting-edge spatial methods and day-to-day lab use.
Resources
- Squidpy Starter Pack - Jupyter notebooks for the first five tutorials ($19)
- GitHub - all code from the blog, free to use
- NeoantigenLab - sister blog covering neoantigen biology and cancer immunotherapy
Contact
Questions, suggestions, or collaboration inquiries: Contact us
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